rs48694642 SNP Detail

Summary

• ID
  rs48694642
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156767745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG GAGCAAATAA CAATATTTGG
  T
  ATCCCCTAGT CCCGGATTGA TGAGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145809586	ENSMUSSNP6780933	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs48694642					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156767745 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	within coordinates
Cpgi904	CpG island 904	within coordinates
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	549 bp upstream
Rr19959	regulatory region 19959	1256 bp proximal
Rr28786	regulatory region 28786	within coordinates
Rr367037	regulatory region 367037	1176 bp downstream
Tssr9581	transcription start site region 9581	486 bp downstream
Tssr14475	transcription start site region 14475	1366 bp upstream
Tssr14476	transcription start site region 14476	1322 bp upstream
Tssr14477	transcription start site region 14477	626 bp upstream
Tssr14478	transcription start site region 14478	560 bp upstream
Tssr14479	transcription start site region 14479	518 bp upstream
Tssr14480	transcription start site region 14480	135 bp upstream