rs48695401 SNP Detail

Summary

• ID
  rs48695401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135674135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAAAAT TAGAGGCATG
  TCAGCCCCGC TACCCTTCAC CCCTGCTCAG GGGAAGTAGG TTCCTTTCCT GGGCCATGGC
  CCAGCGTGTC ACTGGATCTC CCCACTCTCA CCCTCGGTCA TCTCTGGCCT CTGAGCTGCT
  GGGAAAGGGT GGCTGTCAGC CTGGCCATCG GCTCTGCCGT GGGGAAGTGG ATGCAATGAT
  R
  AAGACTCACC AGACTTCAGC CAAGGTCATT GCCCTAATGA GAAGGCTCTG TCAGCAGATT
  TTTCCTGGAA AGAATTAATA ATAGATGATT TATAGAAGTG AGGGGCAGGG TGGGGTGGGG
  GGAGTCTTAG TAAATGATGT GTTAAATGAT TGGGGGCTTT AACTATGCAA TGAGGAAAGT
  GTGTGGTGTT GCCAATTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60803845	NES16474135	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48695401					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60803845	NES16474135	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135674135 () rs orientation: forward

Symbol	Name	Function Class
Csrp1	cysteine and glycine-rich protein 1	within coordinates
Rr419262	regulatory region 419262	within coordinates
Rr419263	regulatory region 419263	1262 bp proximal
Tssr222	transcription start site region 222	373 bp upstream