rs48696437 SNP Detail

Summary

• ID
  rs48696437
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32876575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAGAATA CAGACTGCAA
  CCAGATATGG GGGCATAGAA ATCAAGATTG AATTACACAG CGCACAGTAA CATGCCTACA
  CATTCCAAAT TCTAAGGGGG TAGGTATGGG CAGATAAACG TCCATGTTCC TTTGGTCTGG
  GTGGGATGCC TAAGAAGCAT GCTCAGTACT GTGTCTCCAA GAGCCCCATC TTCCATCAAG
  M
  TGAGCCCCAA CGATCATGGT GCACACCTCC CTCAGCAAGC AGCTTTTGAC TCCTGTCTCC
  TCTTCCCATT CCAGTTCTTC ACAGTGCTGC TGTTGTTTCT TGGGATTGCC TTCCAAAGAG
  ATGCATGGCA GTTGAGAGTT GAGTCTTAGG GTCACCTCCA AAAGAAGAGT TTGACCTCTG
  GGGAACACAA AATAAAACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss62679635	NES17313180	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs48696437					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679635	NES17313180	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32876575 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	1299 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Rr525786	regulatory region 525786	527 bp proximal
Rr525787	regulatory region 525787	1070 bp proximal
Rr525788	regulatory region 525788	1310 bp proximal
Tssr143725	transcription start site region 143725	1277 bp upstream
Tssr143726	transcription start site region 143726	1365 bp upstream
Tssr143727	transcription start site region 143727	1388 bp upstream
Tssr143728	transcription start site region 143728	1408 bp upstream
Tssr143729	transcription start site region 143729	1420 bp upstream
Tssr143730	transcription start site region 143730	1443 bp upstream
Tssr143731	transcription start site region 143731	1465 bp upstream
Tssr143732	transcription start site region 143732	1479 bp upstream