rs48696839 SNP Detail

Summary

• ID
  rs48696839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56962503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTCTTT AGTGTGAGTG
  TGCTGTTGTT ATTCCAGGAA TTTCTCCCTT CCCCTCCAGA CAGGGTTTCT CTGTCAGCCC
  TGACTGTCCT AGAATTCACT CTGTAGCCTA GGTTGTGCTG GGATTAAAGG CATATGTCAT
  TCCCCACCTC CCAAGGGATT CCAACTTTTT TTTAAAAGAT GTATTTATTT ATTATATGTA
  Y
  GTGAGTACAC TGTAGTTCTC TTCAGACACC GGAAGAAGGC ACCAGATCTC ATTACAGACC
  ACCACATGGT TGCTGGGAAT TGAACTCAGG ACCTCTAGAA GAGCAGTCAT TGATCTTAAC
  CGCTGAGCCA TCTTTCTAGC CCCTCATTTA CTCTTGTAAA ATGTGGGAGT CAGGGCTGGA
  AAGATGGCTC CACCATGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss136516049	ENSMUSSNP1205907	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs48696839					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56962503 () rs orientation: forward

Symbol	Name	Function Class
Gm10658	predicted gene 10658	1678 bp downstream
Ptpn9	protein tyrosine phosphatase, non-receptor type 9	within coordinates
Rr195851	regulatory region 195851	898 bp proximal
Rr212037	regulatory region 212037	982 bp proximal