rs48696857 SNP Detail

Summary

• ID
  rs48696857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14067287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTAGAGA AAATGAAGAT
  AAACTGTAAC CCAACACTTG TGAAAAATAC CCTGAAATTA TAGTACATGT GAGAGAGTGC
  TTAGAGGGTG GTCAGGTTAT TTTCTGAATT TTCTTTAAAT TATTGAAATG AAATTCACAC
  AGTATACTGT CATCTGCATT CTGGTGTGTG CAGCTCTACC CTAAGAGTGT TTCTCCAGTG
  Y
  AGCAAGGATA GTCATTCTCT CTTTCCACAG GCCCTGGGGT CCACTTTCTT AGTTTTTTAG
  TGTGAGGCAC TTGCTTTTTT GTAATGAGCC TGTGGTGTTG GGTGCATTTG CACATATGTA
  TTCTTGACAG TGTGTCTGTA GAGTTAGTGG GCTGGAGGGT AAACTTCTCA TTAAGGTGGA
  ATTCTCTCAC CCTGGTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60543074	NES16555059	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48696857					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60543074	NES16555059	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14067287 () rs orientation: forward

Symbol	Name	Function Class
Afdn	afadin, adherens junction formation factor	within coordinates
Tssr142714	transcription start site region 142714	932 bp downstream
Tssr142715	transcription start site region 142715	906 bp downstream
Tssr142716	transcription start site region 142716	865 bp downstream
Tssr142717	transcription start site region 142717	842 bp downstream
Tssr142718	transcription start site region 142718	829 bp downstream
Tssr142719	transcription start site region 142719	259 bp downstream