rs48697011 SNP Detail

Summary

• ID
  rs48697011
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAATCAA GCTGGCAGTG
  AAGACGATCC ACCACACATT TAGGATCAAG TTATTTCTGT GCCGAACGCA GGCAGATTTT
  TAAGATCTTG TCATTATCTT TTTAATCATA CCAGTATGAA AACCATTTAC AGGAGTTTAT
  GTTAGGTGTT GTAACGGACC CAGAGATGGT TTAAATATAC ACAGACATGG CTTTTACCTG
  Y
  AGCCAAGCAC TTAGTAGGCT GAGGCAGGAG AATTGCTATG AGTTTGATCT AGCCTGGGCT
  ATATAGTGAG TTCCAGGCTA ACATGGGCTA CAGAGTGAGA CCTTGTCTCA AAAAAAATTA
  TTATCCTAAA TAAAAGAATT AAGAAGTGTC TGGGGAGTGG GGGGCTGGAC TCCAGATGCC
  CCCATCTTGA CACTGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876650	ENSMUSSNP5994515	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320958788	CHEV_3_127672234	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48697011					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762965 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1605 bp upstream
Gm65460	predicted gene, 65460	197 bp upstream
Rr52	regulatory region 52	665 bp proximal
Rr584913	regulatory region 584913	1658 bp proximal
Rr584914	regulatory region 584914	1758 bp proximal