rs48698079 SNP Detail

Summary

• ID
  rs48698079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20578898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTAGTGAT GTGCCGGTGT
  GATGAGTGAG TGAGACAGCT CTGGGGAATG CTCACTGAAG GCCAGTTTTC ATCGCCATAA
  TAGAACTCTA TGCTGTTCTG ATCCAGTTGC TTTTAAATTA ATGGCATTCG ACTAAAACAC
  CTTTGGGTTG GGTAGGCTCC TCCAGGGCCT AGCAAGCTCT GGGAAGGGCT GTCTAAGGAC
  R
  CCACCTCAGG TCACACCAGA AGCACAGGTA ATAGAGACTC CGTGGAGACA AGTCTGCAGT
  TAACACTAGC TACAAAACAA CCCAGGCACC AAATGTCAAA GGTCCGGTTT ATTCTGGCAA
  CCCGGAAAGA AAACATGTAA ATAATAAATT TAAAAAACAA AATCCATGCA CTCAGATCCA
  GGGATAGGGT GGGAGTGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61358374	NES16736087	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48698079					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61358374	NES16736087	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20578898 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21396	CpG island 21396	538 bp proximal
Olfm2	olfactomedin 2	88 bp downstream
Rr674553	regulatory region 674553	654 bp distal
Rr674554	regulatory region 674554	690 bp distal
Tssr88321	transcription start site region 88321	251 bp downstream
Tssr88322	transcription start site region 88322	322 bp downstream
Tssr88323	transcription start site region 88323	397 bp downstream
Tssr88324	transcription start site region 88324	442 bp downstream