rs48699066 SNP Detail

Summary

• ID
  rs48699066
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:94560180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGTCTTTC ACACAATGAT AAATATTTTG GAGTTGTCCC
  CAGGTGGGAA GCTTCATGGA TGTCTTCTAT CTGGGTGTTT GTGGGGGCCT CTCTGACTGG
  Y
  AGGCGTCTCA CTCTAGTTAT GACTCCATTA TAAGACTGTT TCTCCACCAG GGCAAGTCCA
  CAGTGAACAG TGTGAGGTGA TACACTGTGT CCCTTTTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136821615	ENSMUSSNP2584167	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48699066					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:94560180 () rs orientation: forward

Symbol	Name	Function Class
Rr383780	regulatory region 383780	1588 bp upstream
Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	within coordinates