rs48699973 SNP Detail

Summary

• ID
  rs48699973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5855770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTCAAGA CAGCTGAGTT
  TGATCCCCAG CACCCAAGTA AAAAGCCAAG GATGTTGGTC CAACTTGTAA CGCAGTGCTG
  GGGGTAGAGG CAGGAGGTTC TCTGGCATAT GATGGGCAGT CAGCCTAAGC TAATAGTTAA
  GCCCAGGTCC CAGTGACAGA CCTTGTCTCT GAGAGCAGCT TCTGAGAACA CTCAAGGTTG
  R
  CTTCTGGCAT CCCCACACAT TGTACATATG CATGAATGTG TGCCATAGCC ACACACGGGC
  TTGTATACAT TCCACACAAA GACTTACATG GCCCTACTCA GTTTCTTTCA AAGAGCCTTG
  GTCTCTCTGT CGATTATAGA GCTGTCCCTA CTGCCTTTCC ATCAGTCAGG GCTTTGCTGG
  TGGTTTAAAC GTCTATGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146275377	ENSMUSSNP6596427	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48699973					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5855770 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Tssr16009	transcription start site region 16009	1886 bp upstream