rs48701454 SNP Detail

Summary

• ID
  rs48701454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:150841832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCAGGTAT CAGGTGGGAT
  GAAGCCAAGG GCCTCATTTG TTCTGTTTTC ATGGCACAAG GGTTTGCTCA TAGAAATAAA
  AAGGTGTATA CAAACATCTG TGCTCATCTG TTCATATTAA TAAAGTGAAT GCTAGATGGG
  AGATCAGCAC CTTCACTAGA ATGGTAATTA GTTAAAACAC AGCTATTGAA CTGGAATTTG
  Y
  TTGATTTATT CATCTTATAT TCAAGCTATT TGTGTAGAAG GAAGGTCTTT AGAATGGATG
  GCAGATAGAT TTTTATTATG AGACCGCATA ATATGCATTT TTAAAGATAA TACAGGTCTT
  CAGCCTGTAC GGCACATGTC ATAGCTAATA AGCTGGGGTT GGGGAAAATT GAAGTCAATG
  AAAGAATTAT GTAACATTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60858707	NES15999378	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48701454					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60858707	NES15999378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:150841832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17112	CpG island 17112	290 bp proximal
Rr625814	regulatory region 625814	1065 bp distal
Rr625815	regulatory region 625815	260 bp proximal