rs48702805 SNP Detail

Summary

• ID
  rs48702805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:46876453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCCTC ACTGCTTGCT
  GTCTGCAGGG CTGTCTCCCA GGGTGCTGGC GATCTCACTG AAGGAGGGCC GGTCCTTGGG
  GTTCGGGGCC CAGCAGCGCT GCATCAGCCG GTAGAGCTTA GACGGGCAGC CTTCGGGCTG
  CGGGAGTCGA GCCTTGCCAG CCTGCAAGTC TGTAGAATAC ACAGTGGGTA GCATTAGCCC
  R
  AATGTTTAAT GGCTTGTCAA TACCTGCTGG GGATTGAGGT TTCCATGGTA TTCTCTCAGG
  GACTGGTCTG CTCTGGGGGG TACTGGTGAG TGATGGGTGG GCACCGCCAC ATTTTAAGAG
  TGTGACAAGG AGAGATAACT GACCCTCAGT TCTCTCTGGC TGGTAGACAG GGTCCCTGCG
  GGAGCTCAAG CAACTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62758922	NES17342398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48702805					SNP	G	G	G	G	G	G	G	G	G	G	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62758922	NES17342398	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46876453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ptk7	PTK7 protein tyrosine kinase 7			Intron
				Noncoding-Transcript-Variant