rs48702971 SNP Detail

Summary

• ID
  rs48702971
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48266019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGATTTGA ACCAGGGACC
  TCTTGATCTG CAGCCAAATA CTCTACCCCT GAGCTATACC CCCACTAGTA ACAGTATACA
  CAGTTAATAA TCATCATCTG AGTGGTGATA AATTATGAGT GACTACAAAG TTAAATTAGA
  GATGCTCACA GATTTACTTT CCAGAAGTTG CCAGACCTGA CTGGTAAGAT GCCTTCTACA
  R
  CCATGCAGCT TTCTAGGCCC ATCCCTGAAA AACATCTCCA GTCAAAAAAA AAAAAAAAAA
  AAAAAAAAAA AAAAAAAAAA AAAGGAGCAG AGCAGCCGCA GACCCTGAGC CTACTAACAC
  TGCTATCCTG AATTAGCTCC TGAGCTTTGC GCAGTGGCAG TATCGTAGCC AATGAGGTTT
  ATCCGAGGCG CGATTATTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60884041	NES16035328	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48702971					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60884041	NES16035328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48266019 () rs orientation: forward

Symbol	Name	Function Class
Gm22122	predicted gene, 22122	143 bp upstream
Gm30362	predicted gene, 30362	within coordinates
n-TCgca12	nuclear encoded tRNA cysteine 12 (anticodon GCA)	138 bp upstream
Tssr56117	transcription start site region 56117	131 bp upstream