rs48703133 SNP Detail

Summary

• ID
  rs48703133
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112642718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTG GCAGGTGTCA GGGTTCTCAG
  M
  ACAGATGGTG GACCAGTCTG AGGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138725630	ENSMUSSNP7226345	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48703133					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112642718 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	1452 bp upstream
Cpgi5173	CpG island 5173	1375 bp distal
Cpgi5174	CpG island 5174	1819 bp proximal
Gm30150	predicted gene, 30150	314 bp downstream
Rr369631	regulatory region 369631	745 bp downstream
Rr473554	regulatory region 473554	1863 bp distal
Rr473555	regulatory region 473555	1884 bp distal
Rr473556	regulatory region 473556	337 bp distal
Rr473557	regulatory region 473557	1281 bp distal
Rr473558	regulatory region 473558	816 bp distal
Rr473559	regulatory region 473559	625 bp distal
Rr473560	regulatory region 473560	379 bp distal
Tssr115391	transcription start site region 115391	1861 bp downstream
Tssr117880	transcription start site region 117880	1917 bp upstream
Tssr117881	transcription start site region 117881	1899 bp upstream
Tssr117882	transcription start site region 117882	1520 bp upstream
Tssr117883	transcription start site region 117883	1470 bp upstream
Tssr117884	transcription start site region 117884	1447 bp upstream