rs48703571 SNP Detail

Summary

• ID
  rs48703571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:27799737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGATTAAA AAATAAGGGT
  TAAGGCTGGA GAGATGGCTC AGTGGAGAGA TGGCTCAGAT GGCACTGGCT GTTGGCTGTT
  CTTTCAGAGG ACCTGTGTTC AGTTCCCAGC ACCCACATGG TGGCTGTGGA GAGACAGAGA
  CAATGACAGA CAGACAGAGT TTGTGTCTGT TCACTACCAA GGTTTGCATG TGTTTCTGCC
  Y
  TCACCCACCT CAGTGGCTAG CTGCTTTCCT GCTGTCCCCG ACTCACTCCT CAGAAATGAT
  AGCAGTTAGT ATGTGTGAAC AGTCCACCTC CTTCCTGGCT GCTTTCAGAT AAGGGAAACA
  GTGCTCACAG GAGTCCTGCC TAGAGCTGAT CCCCAATGCT GAGAGAAGAA GGCTGGGACT
  TAAAAGGCCT CACCATAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148631780	ENSMUSSNP339735	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48703571					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27799737 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	Intron
Gm10935	predicted gene 10935	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Rr644167	regulatory region 644167	332 bp proximal
Rr644168	regulatory region 644168	420 bp proximal
Tssr65362	transcription start site region 65362	942 bp upstream
Tssr65363	transcription start site region 65363	983 bp upstream