rs48703577 SNP Detail

Summary

• ID
  rs48703577
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88192993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTCAGGACAC TCAGGGCCAG CCTGATGCTC CTGAGGTATC
  GTGAAACTTG GCCTGGTGAG CACAAGCTAC CGGGTATGAC AACTTGCACC TCTTTGTTGG
  M
  AGCCAAGAGT CTCTCACAAG TGTACTAGCA GTCTGTGCAG TTGAATCCTG CAGGACTCTT
  CTGTGACAGC CAGGAGAGAT TGACCGTTTC TGGGAACTCT G                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63352293	NES17507696	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A	C	A	C	A	A	C	A
ss144899386	ENSMUSSNP144685	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48703577					SNP	C	C	?	A	A	A	A	C	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63352293	NES17507696	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88192993 () rs orientation: forward

Symbol	Name	Function Class
Hjurp	Holliday junction recognition protein	within coordinates
Rr18063	regulatory region 18063	1208 bp proximal
Rr28029	regulatory region 28029	1753 bp proximal
Rr35066	regulatory region 35066	within coordinates
Tssr12870	transcription start site region 12870	406 bp upstream