rs48705303 SNP Detail

Summary

• ID
  rs48705303
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81202040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAAGACA CATCCAAGTA
  AGGGCACAGT GACAAAGGCC ACAAAGTATG GGCCATGATC TAGAGATCCA CAGAAGGAAG
  TGGATACCTA AGTCTTGGGT TGGGGAGAAT GCTCTGGGAT CACTGGTGGC ATCGCTGAAC
  ATGCAGAGCC CAGGGCCTGC TCATTCTGCT AGTGCATCCT GTGTATCTCA TGACAATAAA
  M
  AGCAACAACC AATCTCATAG CTCAGTCAAC CCTTTACAGT CTGTATAGGC GGCGCTCCAC
  TTGGGTTCCT GTTTTCTCAC CAGACATCAC CTCCCCCTCT CTGGTCACCA ACATGCTAAG
  CTTGCTCCAG TCAGGGTCCT GGCCAACTTA CCCAGGACAC TGCTGTGGGG TGGGAGCCCA
  AGCCACAGGC CCTCCCTGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52387620	NES15272391	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48705303					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52387620	NES15272391	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81202040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1975	CpG island 1975	762 bp distal
Fzr1	fizzy and cell division cycle 20 related 1	673 bp downstream
Mfsd12	major facilitator superfamily domain containing 12	within coordinates
Rr435631	regulatory region 435631	within coordinates
Rr435632	regulatory region 435632	1101 bp proximal
Tektip1	tektin bundle interacting protein 1	386 bp upstream
Tssr94744	transcription start site region 94744	1905 bp downstream
Tssr94745	transcription start site region 94745	1834 bp downstream
Tssr94746	transcription start site region 94746	1792 bp downstream
Tssr94747	transcription start site region 94747	1780 bp downstream
Tssr98595	transcription start site region 98595	1347 bp upstream
Tssr98596	transcription start site region 98596	405 bp upstream
Tssr98597	transcription start site region 98597	381 bp upstream
Tssr98598	transcription start site region 98598	363 bp upstream