rs48705388 SNP Detail

Summary

• ID
  rs48705388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106766633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAA GACACACAGT GCAGACAGCC
  Y
  ATGTGGTTTA GAGAAGGAAC ATAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136941084	ENSMUSSNP1462931	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323187624	CHEV_9_106791765	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48705388					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106766633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22277	CpG island 22277	1757 bp distal
Cpgi22278	CpG island 22278	1930 bp proximal
Manf	mesencephalic astrocyte-derived neurotrophic factor	within coordinates
Rr401656	regulatory region 401656	1956 bp downstream
Rr686407	regulatory region 686407	1516 bp distal
Rr686408	regulatory region 686408	1398 bp distal
Rr686409	regulatory region 686409	1793 bp proximal
Rr686410	regulatory region 686410	1971 bp proximal
Tssr86942	transcription start site region 86942	747 bp upstream
Tssr91353	transcription start site region 91353	1932 bp downstream
Tssr91354	transcription start site region 91354	1946 bp downstream
Tssr91355	transcription start site region 91355	1960 bp downstream
Tssr91356	transcription start site region 91356	1967 bp downstream