rs48705988 SNP Detail

Summary

• ID
  rs48705988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153136919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATGCAA ATAGATATGA
  CATCAGTGAC TGTATCAACA TACTAAGAAG GACACGGGCT CCTCACTCTT CCATGAGCAC
  ATAGCCAGAG CATGTGAGAA GTTTAGAGAA ATCTGAGCAG TACACAGAGA CTCCATACGA
  GGATGTACAG GGATGCGCAC AGAACAGAGG AAAGGAATCC TTGATTTGTT TTATTATTAG
  R
  TGGGAAAAGG TTTTCAGGTG ATGCATAAGC ACGCCAAGGC ACCCTAACTG TTATCCTGAC
  TCTAGAACTC AACTTCTCAG GTCAGGAAGA AAGAGTTCCC ACAGTGACTA TCAGCAGCAC
  AGACAAGTGT CCTCGTGTCG AAAGGAAGGA AGAAGAGAAT CTTAAATATC TTGCATCAGT
  TGTTTCGCAT TGCTAATTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60821912	NES16491819	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48705988					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60821912	NES16491819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153136919 () rs orientation: forward

Symbol	Name	Function Class
Lamc1	laminin, gamma 1	within coordinates
Rr19802	regulatory region 19802	719 bp distal
Rr19803	regulatory region 19803	1082 bp proximal
Rr31194	regulatory region 31194	1883 bp proximal
Tssr14256	transcription start site region 14256	1294 bp downstream