rs48706124 SNP Detail

Summary

• ID
  rs48706124
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56918507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG GCGAGCCTCC CTGTGTGTGG
  K
  TGCAGGGCTG GGATGGGGGT AGGAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145807861	ENSMUSSNP5986163	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48706124					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56918507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9367	CpG island 9367	1208 bp distal
Cpgi9368	CpG island 9368	1728 bp proximal
Gm56912	predicted gene, 56912	543 bp downstream
Micos13	mitochondrial contact site and cristae organizing system subunit 13	1736 bp upstream
Rpl36	ribosomal protein L36	1909 bp upstream
Rr340044	regulatory region 340044	706 bp distal
Rr340045	regulatory region 340045	93 bp proximal
Rr340046	regulatory region 340046	1693 bp proximal
Rr370299	regulatory region 370299	1564 bp downstream
Tssr5177	transcription start site region 5177	1991 bp upstream
Tssr145313	transcription start site region 145313	1591 bp downstream
Tssr145314	transcription start site region 145314	1848 bp upstream
Tssr145315	transcription start site region 145315	1885 bp upstream
Tssr145316	transcription start site region 145316	1929 bp upstream
Tssr148822	transcription start site region 148822	1821 bp upstream
Tssr148823	transcription start site region 148823	1792 bp upstream
Tssr148824	transcription start site region 148824	1688 bp upstream
Tssr148825	transcription start site region 148825	1673 bp upstream
Tssr148826	transcription start site region 148826	1568 bp upstream
Tssr148827	transcription start site region 148827	1536 bp upstream
Tssr148828	transcription start site region 148828	1502 bp upstream