rs48707116 SNP Detail

Summary

• ID
  rs48707116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128048197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACCCAA GTGCTGAGAC
  TAAATTAATG CATGCGATAC CAAGTCTGGC AAGATAAAAG AAGTATTTTT TTAAAGTAGT
  TTAATCCGGG GGGGGCGGGG GGAGTGACAC ACAGCCCTCA GGAGGCAGAG GCAGGCAGTT
  TTCTATGAGT TCGAGGCCAG TCTGGTCTAC ATACCAAGTT CCAGGACAGG CAGAGCACCA
  Y
  ACATTATTTA AAAAAAAAAA AAAAAAAAAA GCGTAAATCC GTTTCCCAGA GCCTCAGCAT
  TCTCTTTGGA CAGAATGTGT CTACATTCAA GCTTACTGTT CTGTCTTCTG AGACAGAGTT
  ACTATGTAAC CTTTGCAGGC CTCAAACTCT AGATCCTGCT GCCTCAATTT CCCAAGTGCC
  AGGTTGTGCT CAGTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147738263	ENSMUSSNP5502535	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48707116					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128048197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	274 bp distal
Cpgi2388	CpG island 2388	751 bp proximal
Rr224447	regulatory region 224447	within coordinates
Rr224448	regulatory region 224448	403 bp proximal
Rr402345	regulatory region 402345	317 bp downstream
Rr402346	regulatory region 402346	476 bp upstream
Spryd4	SPRY domain containing 4	534 bp upstream
Tssr99849	transcription start site region 99849	553 bp upstream
Tssr99850	transcription start site region 99850	505 bp upstream