rs48708735 SNP Detail

Summary

• ID
  rs48708735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:83403289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCAGAGT AACTATCATG
  CAGGCAGGCA TCACATCGAC ACAAGCATAT TTTCTCTATA CACTCGCCAT TCAGCAGAGG
  GTAGCTTCAT GGTTTATAGA ATTTTCAATT GGTAAAAGTA ATTGTTCAGT GTTTCAGGCT
  GTGGTCTACT GGAGCAAAGG TACAAAAAGG AGTTATATGG CTTCATAAAA CACATAGTTT
  R
  TAACAGAAAT GTGTGAAGTA TCTACTGTTG CTCTAACAAT CTACCACAAA CTTAGTGGTC
  AAAATGGCTC AAATTTACTT CTTTACAGTT TTGAAGGTCA GAATCTGGTA TGAGCATCCT
  GAACTTAATA TTGGTGACTA GGGTTTGATC TTTCTAGAGG CTTCAAGAGA GCATGTATTT
  CTACTGTATA CATCCGTGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60760703	NES16400819	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	G		A	G	A
ss144833301	ENSMUSSNP1200356	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48708735					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60760703	NES16400819	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:83403289 () rs orientation: forward

Symbol	Name	Function Class
Gm37989	predicted gene, 37989	1028 bp downstream
Gm69621	predicted gene, 69621	692 bp downstream