rs48708960 SNP Detail

Summary

• ID
  rs48708960
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:118341952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAACATG GCTTATTTCC
  TCTTCCCAGG GACCCCATTT GGCTGCATCT TCTGTCCATG ACTCCCACAT TCTGTTGCTG
  TGGTGAAAGC CAGCGACCTA CAGAGTAATT AGTTTGGGTT TTGTCTACAC AGCACCCACA
  TAAGCAATTG GAAAGTGAAA AATTCAGCCA AATCATCGGG CTTTGTGTGT GGCAGTTCCC
  R
  CATGACTTTA AATAGCCAGT TAGTGCTTTT CTGTTCGGTG AAAAGAAAAA AAAAAGGCAT
  TTTCACTAAT TGGTTCTTTC ATCAGCATGT GGACTGCATT GTCAATAATT GGCCTAGGAG
  GGGTGAGCAT GTTAGACTGT TGTTTTGCCT TGGGATGGGG AAGAAAAGAG AGAGAGAAAC
  ACAGAAAGGA ATTGGATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52610943	NES15502353	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48708960					SNP	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52610943	NES15502353	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:118341952 () rs orientation: forward

Symbol	Name	Function Class
Rr369642	regulatory region 369642	804 bp downstream
Rr474222	regulatory region 474222	726 bp distal
Tssr115561	transcription start site region 115561	1452 bp downstream