rs48710096 SNP Detail

Summary

• ID
  rs48710096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149210682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCAGAA GCCCTTGTAG
  AAATATAGTT TTAGCAGTCA AAATGACCAG ACCAAGTCTA AAGCTGCGAA AACAAGATTA
  GCAGTTCTCG GAGAAATAAC TATAACAAAT AATAACAGTT CTCCTGTCCC GCCTCGCACT
  AAATTCCAAG AAAAACCACA AATTGCTCTG ACCTTGCTGC CAGAATTCCC CCGCGACATT
  R
  GTAGCTGACC AATGAGTTTA AAAATATTCT GCTGATTTGC TGACCCATCA TAATATGATT
  GTAAGGCCTG GGGGTCTTAC ACCCTCAGGT GATTCTCATA TAAATTCTAG GTGCAAGGCT
  GAGCTTTTTT CTCCCCTCAG ACTGTAGAAG GCACACCTGC CCGGCACTAG GACCGCGGCC
  CTGGTGCAAG CGCTCGGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss60961296	NES16169784	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs48710096					SNP	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961296	NES16169784	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149210682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	117 bp proximal
Gm56997	predicted gene, 56997	within coordinates
Resf1	retroelement silencing factor 1	230 bp upstream
Rr380294	regulatory region 380294	within coordinates
Rr641718	regulatory region 641718	941 bp distal
Rr641719	regulatory region 641719	within coordinates
Rr641720	regulatory region 641720	137 bp proximal
Rr641721	regulatory region 641721	186 bp proximal
Rr641722	regulatory region 641722	301 bp proximal
Rr641723	regulatory region 641723	481 bp proximal
Rr641724	regulatory region 641724	1439 bp proximal
Tssr59650	transcription start site region 59650	129 bp upstream
Tssr59651	transcription start site region 59651	207 bp upstream
Tssr59652	transcription start site region 59652	260 bp upstream
Tssr59653	transcription start site region 59653	361 bp upstream
Tssr59654	transcription start site region 59654	549 bp upstream
Tssr59655	transcription start site region 59655	598 bp upstream
Tssr59656	transcription start site region 59656	1144 bp upstream
Tssr64178	transcription start site region 64178	1387 bp upstream
Tssr64179	transcription start site region 64179	449 bp downstream
Tssr64180	transcription start site region 64180	472 bp downstream