rs48711527 SNP Detail

Summary

• ID
  rs48711527
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:28039029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAC CTACAGAATG ACTGATACGG
  A
  TGGAGTGTCC AGGTGGGCTC AGAGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134709369	ENSMUSSNP5543973	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss320689853	CHEV_3_27883802	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48711527					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28039029 () rs orientation: forward

Symbol	Name	Function Class
Pld1	phospholipase D1	Intron
Rr574516	regulatory region 574516	1982 bp distal
Rr574517	regulatory region 574517	697 bp distal
Rr574518	regulatory region 574518	42 bp distal
Rr574519	regulatory region 574519	259 bp proximal
Tssr28637	transcription start site region 28637	680 bp downstream
Tssr28638	transcription start site region 28638	590 bp downstream
Tssr28639	transcription start site region 28639	241 bp downstream