rs48711807 SNP Detail

Summary

• ID
  rs48711807
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:75454881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATGTCCC CATCAGGGTT TTCCCGGCTA AGGAGGGAGA
  GGACTGAAAT AGCGCTGTGT TTCGGGTGTG GGGTGAATGC TTTCAGTGCC AGTGGGGAGG
  G
  CTGCGGGCTG TCTGCTGAGA ACACGACCCA GAGCCGAAGA CAGCAGCCCA GCCCCACCCG
  TCACATCCCT GATCCAAAGG GACTAGCTTG GCACTTGGA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132438513	ENSMUSSNP4518479	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323751022	CHEV_11_75377557	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48711807					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75454881 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D11Jcs7	DNA segment, Chr 11, John C. Schimenti 7			161 bp distal
Rr451207	regulatory region 451207			1282 bp distal
Rr451208	regulatory region 451208			within coordinates
Slc43a2	solute carrier family 43, member 2			Intron
				Noncoding-Transcript-Variant
Tssr102977	transcription start site region 102977			389 bp downstream