rs48712530 SNP Detail

Summary

• ID
  rs48712530
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:119983936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACACAAATA GGTGGTGGAT AAGCAAATGA TTGATAGATA
  AACAGGTACA TATGAAGATG ATTGATAAAT GCTAGATCAA TAGCTGATGG GTACACAAAT
  R
  AGTGACAAAT ATGGATAGAC AGGCAGAGGA GAAACAGATC CAGAAAAACA AGCAAAACCC
  CCCAAACTGA AAAAATATCC AAAGACTTTG CAGCCGAACT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60789416	NES16432253	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48712530					SNP	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60789416	NES16432253	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:119983936 () rs orientation: forward

Symbol	Name	Function Class
Rr30107	regulatory region 30107	within coordinates
Rr371936	regulatory region 371936	within coordinates
Sctr	secretin receptor	within coordinates
Tssr8396	transcription start site region 8396	970 bp downstream
Tssr8397	transcription start site region 8397	947 bp downstream