rs48712550 SNP Detail

Summary

• ID
  rs48712550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43878731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCG ATGACTCATT AAAGCCGCAA
  Y
  CCTGGAGCTC TCTGCACTTT TGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145670511	ENSMUSSNP5763425	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss325395752	CHEV_17_43704789	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48712550					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43878731 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	483 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	278 bp upstream
Rr527121	regulatory region 527121	within coordinates
Rr527122	regulatory region 527122	440 bp proximal
Tssr144685	transcription start site region 144685	147 bp upstream
Tssr144686	transcription start site region 144686	256 bp upstream
Tssr144687	transcription start site region 144687	312 bp upstream
Tssr144688	transcription start site region 144688	450 bp upstream
Tssr144689	transcription start site region 144689	607 bp upstream
Tssr144690	transcription start site region 144690	642 bp upstream
Tssr144691	transcription start site region 144691	662 bp upstream
Tssr144692	transcription start site region 144692	718 bp upstream
Tssr144693	transcription start site region 144693	766 bp upstream
Tssr144694	transcription start site region 144694	801 bp upstream
Tssr144695	transcription start site region 144695	849 bp upstream
Tssr144696	transcription start site region 144696	866 bp upstream
Tssr144697	transcription start site region 144697	1556 bp upstream
Tssr148130	transcription start site region 148130	664 bp downstream