rs48714863 SNP Detail

Summary

• ID
  rs48714863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:5858295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTTCTCTCAT CTGCCTGTTG TGTGTTGGGG CCCACCACAG
  TGAAGGCTAT CCTGAGCATC AGATACTACA CTTTTTTAAG GCACAAAGGA GTATGAATGC
  R
  TGTCGTTTTG TTGTTGGTTG TGTTTTAGGG AAGGGAAATG CTACATTTAT CTTTGTTGAC
  TGTTGGCAAG AAGATTGATG CCTACACAGT TGGTGCTGTG G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146275392	ENSMUSSNP3580448	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48714863					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:5858295 () rs orientation: forward

Symbol	Name	Function Class
Nudt5	nudix hydrolase 5	within coordinates
Rr49685	regulatory region 49685	495 bp distal
Tssr16009	transcription start site region 16009	627 bp downstream