rs48715107 SNP Detail

Summary

• ID
  rs48715107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:14527544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCTCC TTCCAGATAA
  GTATGCCGTT CGCTTCATCC CGCATGAGAA TGGCATCCAC ACGATCGATG TCAAGTTTAA
  CGGGAGCCAC GTGGTCGGGA GCCCTTTCAA AGTACGTGTA GGAGAGCCTG GCCAGGCAGG
  CAATCCTGCT CTAGTGTCAG CCTACGGTGC TGGGCTTGAG ACGGGCACCA CAGGTAAGAA
  R
  CGCTGCTTCC CTCGTTACCT GAGCAGCTCT CTCTGGGAGA GCTGAGGTAG ACATCGTTAG
  CCCCTGGAGG CCTTCTGTGC TCTGTCCTTG GGAAAATGCA GACCTGCGGG CTTTGGAGGA
  ATTGGGGGCC ATTGTTTGAA CCGGGGTAAA TCCAGACAGA GGCCTGTATT GTTATACCTC
  ATTACAGTTT GTTTGTAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss62080613	NES17154320	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	A	G	G	A	A
ss138984443	ENSMUSSNP1111217	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs48715107					SNP	A	G	G	G	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62080613	NES17154320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14527544 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Flnb	filamin, beta			Intron
				Splice-Site
Gm62553	predicted gene, 62553			within coordinates
Rr487922	regulatory region 487922			915 bp distal
Rr487923	regulatory region 487923			434 bp proximal
Tssr124220	transcription start site region 124220			570 bp downstream