rs48715192 SNP Detail

Summary

• ID
  rs48715192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154064658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGGTGGA GGCTGGTAGC
  CTGGGCAGGG ATCTGTAAAA GAATCTTCTG GCAGCTGCCA TATGGAGCTC ATTTCTGTGG
  CTGGTTCAGT TAGTGGAGGG CAGAGGCCTT GCAGAGTAAA TGGGGTGGGG GAAGGGCGAT
  GAGGGCGTGG CTAGAGAAGC AGCGCTAAGA GGGACAGGAC AAGCCTCTTA GCCATGGCAA
  Y
  GGCCCTCTCC TTGGGGTTGA GGTGAGAGCT TAGGTGTCAC TCCTGGATAC AGAGGTCATG
  TTCACAGGCA GGCTATGCTG CCTGCCGGGA TCTTCCACCC AAGAGTACTT CTTGCTGAGT
  GGATCTGGGC ACGGAATGTG GTCAGCAGAC ACCCTCTGCC TGTCGGCTCT CTTCAGGGCT
  TGCCTCAGCT CAGAGAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145757257	ENSMUSSNP231789	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48715192					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154064658 () rs orientation: forward

Symbol	Name	Function Class
Rr420823	regulatory region 420823	within coordinates
Rr420824	regulatory region 420824	1202 bp proximal