rs48715213 SNP Detail

Summary

• ID
  rs48715213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184468042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCAGAGAAG GCACACAGCC AAAGATTATT
  TCGCAATACC AAGAATAGTC AAGGTCAAGG CAGGTCCCCT TTAGAATTTG ACAATGTGGT
  TTACGGGGAT TTAAGCTAAA GGAAAGGATT CGATGCAAAT ACAACACTCA GGCAGGAGGC
  Y
  CAACTGGTCT CTCTTTGGTT CTCTCTTTTG CTCAGATGAG CAAATTCTTG CTTTAGACCC
  AGGGACACAC AAAGTCAGCC ACAGAGCATG CTAGGCATTC CTTATGGCAG GAAGAACACT
  CAAGGTGAAC TTAAACTAGC CAGAGCTGTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60355371	NES15858933	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	C	T		T	C	T		C
ss320168853	CHEV_1_186559724	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48715213					SNP	T	C	C	C	T	C	C	C	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60355371	NES15858933	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184468042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1099 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425267	regulatory region 425267	1678 bp distal
Rr425268	regulatory region 425268	within coordinates
Rr425269	regulatory region 425269	1967 bp proximal
Tssr10590	transcription start site region 10590	436 bp downstream
Tssr15648	transcription start site region 15648	818 bp upstream