rs48715387 SNP Detail

Summary

• ID
  rs48715387
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22714194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTCAACG ATACCAACGT
  GGTCCACACC GTCAACACTG CCCTGGCTGC CTTCAACACA CAGAATAATG GAACCTATTT
  TAAACTGGTG GAGATTTCCC GGGCTCAAAA TGTGGTAAAA ACTTAACACT CTTTTGATAG
  ATTTGGGCGA TTTGGTGGCC CTTGGGGCAT GTGTGGGGGT GATAACCAGA AGAAAAGGAA
  R
  CATTGGCTGG AAGAACTGGC AGGGGTTCTA GAACTTATGG AGCCCTAAAC TCTCAGCAGC
  GCTGTCCCAA ACTGAGCCAG TTCAACATAG GTCAGCCACA GGCAGAAGGC AGGTAACACC
  CTGGCCTCCT GGCTTTACCT AACACTTAAT AGCAGGGCTC TCTGTTCAGA CACAATACAT
  TCACCGGGTG CCACACGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss63681316	NES17064331	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs48715387					SNP	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63681316	NES17064331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22714194 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	1058 bp upstream
Tssr4819	transcription start site region 4819	103 bp downstream
Tssr4820	transcription start site region 4820	503 bp upstream
Tssr137563	transcription start site region 137563	1203 bp downstream
Tssr137564	transcription start site region 137564	1173 bp downstream
Tssr137565	transcription start site region 137565	1036 bp downstream
Tssr137566	transcription start site region 137566	1027 bp downstream
Tssr137567	transcription start site region 137567	659 bp downstream
Tssr137568	transcription start site region 137568	628 bp downstream
Tssr137569	transcription start site region 137569	607 bp downstream
Tssr137570	transcription start site region 137570	590 bp downstream
Tssr137571	transcription start site region 137571	252 bp downstream
Tssr137572	transcription start site region 137572	153 bp downstream
Tssr137573	transcription start site region 137573	143 bp downstream
Tssr137574	transcription start site region 137574	124 bp downstream
Tssr137575	transcription start site region 137575	114 bp downstream
Tssr137576	transcription start site region 137576	556 bp upstream
Tssr137577	transcription start site region 137577	978 bp upstream
Tssr137578	transcription start site region 137578	1049 bp upstream
Tssr140504	transcription start site region 140504	1052 bp upstream
Tssr140505	transcription start site region 140505	1003 bp upstream
Tssr140506	transcription start site region 140506	583 bp upstream
Tssr140507	transcription start site region 140507	220 bp upstream
Tssr140508	transcription start site region 140508	178 bp upstream
Tssr140509	transcription start site region 140509	160 bp upstream
Tssr140510	transcription start site region 140510	112 bp upstream
Tssr140511	transcription start site region 140511	98 bp upstream
Tssr140512	transcription start site region 140512	1113 bp downstream
Tssr140513	transcription start site region 140513	1124 bp downstream
Tssr140514	transcription start site region 140514	1157 bp downstream