rs48715656 SNP Detail

Summary

• ID
  rs48715656
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:115667813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATAGTCC TTCTTAGTGA
  CCTTTGAGTA AATGTCTCCT AGGGGGTTAT GAATGGATAC GAAAAGCCTT CAAAACAGAA
  GGACCACTAG TGGCGCTGCT TGCTTTTGCA TTGACTGTTA AAGGAGGAGA CCCATGAGTG
  CTCTGGTAGA GAATGGAAAA CAGAGTTTTG AGTTTCCTTA GCCCAGTACT TGGATGTTGC
  W
  GGTAGCCTAA GGACTGTACA CAGCAGACAG CAGACAGCAT ACACGGGTAA CACTGGCACA
  GAATCTCCAT ATTTAACTGT GATTGACTAC TGTCAATCAC ATGAAGGAGT GCATGAAGGA
  AAATGAGTGG TCTATGGTCT GGGGCTCTCT GAGGTTTATG TATAAGAGTA TACTTGAGTT
  GCATGTGGAA GACCTGAATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61319848	NES16926077	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48715656					SNP	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61319848	NES16926077	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115667813 () rs orientation: forward

Symbol	Name	Function Class
Rr385334	regulatory region 385334	1352 bp upstream
Rr439263	regulatory region 439263	1898 bp proximal
Tspan8	tetraspanin 8	Intron
Tssr95839	transcription start site region 95839	1131 bp upstream