rs48717164 SNP Detail

Summary

• ID
  rs48717164
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90877364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG TTGGAGGTAT GTGATTTGCC
  K
  TTTGATTTTG ACTTTATAGG GGATT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148550099	ENSMUSSNP3915719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325276980	CHEV_16_91080721	CHEVERUD	SCREENING_POP	f	SNP		G	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48717164					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90877364 () rs orientation: forward

Symbol	Name	Function Class
Gm60345	predicted gene, 60345	within coordinates
Rr319589	regulatory region 319589	837 bp proximal
Rr322310	regulatory region 322310	1236 bp proximal
Rr404954	regulatory region 404954	951 bp upstream