rs48719676 SNP Detail

Summary

• ID
  rs48719676
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54730386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT GTCCAAGAGA GAAAGCCGGG
  A
  TGCCCATTAA TACAAGCCCG CAGCT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133205843	ENSMUSSNP7147258	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321804821	CHEV_6_54703395	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48719676					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54730386 () rs orientation: forward

Symbol	Name	Function Class
Gm66973	predicted gene, 66973	within coordinates
Rr140760	regulatory region 140760	within coordinates
Tssr61090	transcription start site region 61090	1499 bp upstream