rs48719692 SNP Detail

Summary

• ID
  rs48719692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96086737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCATGCAC AAGGGACAGA
  TACCATCAAT AGGAACTGGA AGGGCCTGGC TACAGCCCTC TTTCACCGGG GGGGACCTTG
  GGTACTGTTC CCATCATTTG TCCCAAAGCA GCAGAGCCCC TTAGTTATCT GGGGCTCAGG
  GGCCTGAGCT GCCTGTCACT ATAAGGCAGT GGTGGCCAAC CTGTGTACCC TGCTTCCCAC
  Y
  GGTGTGGCTA GCCTCCAAAT CCTCTCATAG CCAGGACTGT GCTAGAATGA TGGAGCATTC
  ACCCCCCCCC CCCAGCACTA GGAAGGGGAG AAGCCCCATG GTGCTGTCTG CTGCCCAGTG
  GGCAGCTTCG TGGACACTTG GTGTGCAGCC ACCCTGAGCA CGTGTTTGCC AGAGGCAGGC
  CAGCCATCAG CTTCACCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60651651	NES16268927	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48719692					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651651	NES16268927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96086737 () rs orientation: forward

Symbol	Name	Function Class
Mmp15	matrix metallopeptidase 15	within coordinates
Rr1960	regulatory region 1960	within coordinates
Rr668229	regulatory region 668229	336 bp distal
Rr668230	regulatory region 668230	within coordinates