rs48721422 SNP Detail

Summary

• ID
  rs48721422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75929652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACCATG GAAGATATAT
  TATATATGAG TACTTCAAAT TATTTGGATG AGACATCACC AAATCAGGGT GACCCACCCT
  CAGATAATCC ATAGAGGGAG AATATTTAAG GGTCCAATGA AAATATTCTG TTCAGTTATA
  GTATCTAGCC ACTATGGCCG GGGAACTGCT TCAGCAGATA GATCCGTTGT AATTGCCACC
  Y
  GGTACCTATA TGTTAGGATG TAAGCATCCC GTCTTGCATG CTCAGGAAAT GTCTCTGGTT
  ATAACAGAAG CAGTGGGGAG GCCCGAGGGG GACTGAAAGT CACCATCTGA AAGCTGTGCG
  CATACTGAGA TGGAAGGACA GCAACAGTAC GCTATGCTCC TTTATCCTTT CTAGGGGAAA
  TGGTCTTTCT TAGCTACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146770226	ENSMUSSNP6039310	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48721422					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75929652 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1810 bp distal
Rr559648	regulatory region 559648	434 bp distal
Rr559649	regulatory region 559649	288 bp proximal