rs48722201 SNP Detail

Summary

• ID
  rs48722201
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:80565611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTTTTC TGAAGATTAC
  AAAAACTCGC CTGTTCCTTA AATAGAAATA GCAGATTTAT GTGAAGCCAC TGATCAAAAC
  CTCCTTGAGC ATGAGCTCCA GGAACACCCT GTGTCAACAC GGTGAAAACA CCCTGCGGAT
  GCCTCAGGAT CAAAGTCCCC TTTCACAGCC ACGCTTCCCA GAATGACCCA GATCCCCTAT
  K
  CCATGCCGTC CTACCTGTTA GGTTATACAG GTGGAAATTG AGAGTAATGT AATCCACCTC
  AGCACACAGA ACAGAGCCAA CTTTCATTCC TCCAAAGAAT ACAGCTTGTG TTTTGTTTAA
  AGGTGAGATT CTAAACCACT GGTAGATGGC TGAAATATAG CTTTTTTTTT TTTTTTTCTC
  TTTTGAGTAA GGGTGGTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136688876	ENSMUSSNP197829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss323024904	CHEV_9_80577165	CHEVERUD	SCREENING_POP	f	SNP			G		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48722201					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:80565611 () rs orientation: forward

Symbol	Name	Function Class
Rr683772	regulatory region 683772	1310 bp distal
Rr683773	regulatory region 683773	within coordinates
Tssr86335	transcription start site region 86335	1645 bp downstream