rs48722625 SNP Detail

Summary

• ID
  rs48722625
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24009537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGAGGCA AACACAGGAG
  GAGTGTGAGG CCAGTCTGGA TTTCTAGCAA GCACCAGGGC AGCCTTGACA CAGTATCAAA
  AAGAGAAAAC AAAACAAGCG ATTGTGAGGG ACTCCGGACC CCGCAGCTTG GTGTTCCCGT
  TCGCAGAGCG GCGCCCAGGC AGCTGGAGCA GCTGTGCCTT TGTTCTGAGT GCCCAGGTCC
  R
  CTGTTTGAGA GCCGAGGGCC ATTCAGCTCC GGCCGGCGGC GTGGTCCCTG AGGCGACTGC
  GGGAGCCCTG GGCTTCCGCT AAGCGTTGGA GGAGGAGCAG CAGCGGTGGC GCGCCACACG
  GTTCTCAGCT GGAATCCATT AGGCCGGGAG GATTTTCGAG AAGAGGTGGC TTGGACATCC
  GGGGAAGGAC TATAGGATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327380	CHEV_17_23927530	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48722625					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24009537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	within coordinates
D930048G16Rik	RIKEN cDNA D930048G16 gene	141 bp upstream
Gm52285	predicted gene, 52285	within coordinates
Rr339285	regulatory region 339285	within coordinates
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142954	transcription start site region 142954	62 bp upstream
Tssr146666	transcription start site region 146666	650 bp upstream