rs48723590 SNP Detail

Summary

• ID
  rs48723590
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182781992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACACACA CACACACACA
  CACACACACA CACACACACA CACACCTTCA ATAGTTAAAA TAGAAGGCGT AGCCAAGTAG
  TAGAGGGCAA AATGACAGCC AGCTTCACCC CTCAGCATCA TATCTTCAAG ATTTGGCACA
  GATCAAAGAG CACAGGCAAG AACAGAAGTA ACTGCCCCGA TCAGGACTTG CTGCGCTGGC
  Y
  GTGTGTACAG TGCATCAGGA TAGGATCTAG GCCGCCTTCC CTGGGTCAGT GCAGGCCTAT
  GTTATCTCGA TGGACAGTTA GGGGTAGCTA CAAAAATCAC AACAGGCCCT CTGCCTCCTG
  TGCTGGGCTC CATGATAGCC AATACCTACC GTCTGCCCCA GCTCTACTTT CTTTCCTACC
  TCAGTTACAA GGTCATTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60352270	NES15858465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48723590					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352270	NES15858465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182781992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1152	CpG island 1152	308 bp proximal
Gm69962	predicted gene, 69962	677 bp upstream
Rr425013	regulatory region 425013	688 bp distal
Rr425014	regulatory region 425014	442 bp distal
Rr425015	regulatory region 425015	within coordinates
Rr425016	regulatory region 425016	372 bp proximal
Rr425017	regulatory region 425017	1770 bp proximal
Tlr5	toll-like receptor 5	361 bp upstream
Tssr10570	transcription start site region 10570	343 bp upstream