rs48723612 SNP Detail

Summary

• ID
  rs48723612
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24825839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTATTCC AGAGGCTTAG
  AAGCCTACCA AAGCCCAGGG TCCTTCACTC ACCCACCTCC CAGAAGCAAA GCCACCTCCC
  AGTGACACCT TCAACTCACT AACACTCCCA AGGGCACACT GAGTCCTTGG GGCCAGCAGC
  TACACTGAAC AGGCTACCAT TAAGCCACAG AAGGGCCCGT GCACATCCAA ATGCCTGTAC
  R
  CGTGCCCTGG CCAGCAAATT CATGAGAGCT GACTTCATGC TCGTGTGATT CTCAATCGAA
  ACCCAAACAA GCCCTATACT TTGCCACCCC AAACAGTGAA GGCAGGTGTG CTGGGGTTCC
  TGGCTCCCCA GGAGCCATCT AGTGGCCCAG GCCACGCTGC GACCAGTTAT CACTGTCTGA
  AACCCCAGTC CTCTCAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148097828	ENSMUSSNP2333083	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48723612					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24825839 () rs orientation: forward

Symbol	Name	Function Class
Gm71653	predicted gene, 71653	1096 bp upstream
Rr608374	regulatory region 608374	375 bp distal
Smarcd3	SWI/SNF related BAF chromatin remodeling complex subunit D3	within coordinates
Tssr50355	transcription start site region 50355	1805 bp downstream
Tssr50356	transcription start site region 50356	1818 bp downstream