rs48724940 SNP Detail

Summary

• ID
  rs48724940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24551239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAC TCCATGAAAT GTCTTCTGAC
  Y
  GCCAAACACA TGTGCGGTAG CACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148091826	ENSMUSSNP3633726	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48724940					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24551239 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15593	CpG island 15593	1559 bp proximal
Gm71601	predicted gene, 71601	1654 bp upstream
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr124920	regulatory region 124920	1561 bp proximal
Rr367796	regulatory region 367796	1030 bp upstream
Tssr50307	transcription start site region 50307	1697 bp upstream
Tssr50308	transcription start site region 50308	1674 bp upstream
Tssr50309	transcription start site region 50309	1655 bp upstream