rs48725285 SNP Detail

Summary

• ID
  rs48725285
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:46811634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAA ATAACCCATT AGGGAAAGCC
  A
  TGGCTATAAA TGGAGCACAA AGGAT                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139387201	ENSMUSSNP54989	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324590197	CHEV_14_47193852	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48725285					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:46811634 () rs orientation: forward

Symbol	Name	Function Class
Gm49319	predicted gene, 49319	within coordinates
Rr491231	regulatory region 491231	908 bp distal
Rr491232	regulatory region 491232	215 bp distal
Rr491233	regulatory region 491233	1234 bp proximal
Rr491234	regulatory region 491234	1660 bp proximal
Rubie	RNA upstream of Bmp4 expressed in inner ear	within coordinates
Tssr128285	transcription start site region 128285	1672 bp downstream