rs48725523 SNP Detail

Summary

• ID
  rs48725523
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88969065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGATCCA CCTGAGTGAT
  GTGTCAAGAA TCTGCTCTTT CCTCTGTTTT TCTATGACTT CCTTCATGTG AAACAGATGT
  CCTGCTTACA TGCCTCCCAC TTGCTTATGC CCTTTCTCCA CTGAGAGCAG ATGAGCCCAC
  AACCTTTCTC TTCAGCCCTG AGCAAACTGA TTTGCAGGCA GAACAACAGA GCAGCAGCCT
  K
  TCTTGCCTGT CTGGCTCCTG ACTAAATCGT GACTCCTGAG AAACTGAGAC TTCTTTTAGC
  AGTCTTGGGT CTCACCAAGC TTGAGGCTCC TAGAGCCACT TTGTGAAATC TCTTAACTTC
  CTTTCCTGGC AGTCCTGAAG TTCAGTGGAC TCTTTTGTAC ACTTAACCAT AAAACCAAAC
  CTGGAACCAA CACTTTCGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61911682	NES17093106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48725523					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911682	NES17093106	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88969065 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	263 bp proximal
Edil3	EGF-like repeats and discoidin I-like domains 3	526 bp upstream
Rr483401	regulatory region 483401	36 bp proximal
Rr483402	regulatory region 483402	313 bp proximal
Tssr120562	transcription start site region 120562	528 bp upstream
Tssr120563	transcription start site region 120563	597 bp upstream
Tssr120564	transcription start site region 120564	636 bp upstream
Tssr120565	transcription start site region 120565	648 bp upstream
Tssr120566	transcription start site region 120566	660 bp upstream
Tssr120567	transcription start site region 120567	723 bp upstream
Tssr120568	transcription start site region 120568	733 bp upstream
Tssr120569	transcription start site region 120569	762 bp upstream
Tssr120570	transcription start site region 120570	786 bp upstream
Tssr120571	transcription start site region 120571	804 bp upstream
Tssr120572	transcription start site region 120572	936 bp upstream
Tssr120573	transcription start site region 120573	970 bp upstream
Tssr120574	transcription start site region 120574	997 bp upstream
Tssr123374	transcription start site region 123374	828 bp downstream