rs48725585 SNP Detail

Summary

• ID
  rs48725585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24927428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGATTCTC TGAAGCACTG
  GTTGTCCTAG AACTCGTTCT ATTGAAGATC TGCTTACTTC TACTTCGCGA CTGCTGGATT
  TAAAGGCGTG TCCTTCCGGC TTGTTTTCTT TTCATTAAAA ATTAATTTGT AGCCGGGCGT
  GGTGGCACAC GCCTTTAATC CCAGCACTCG GGAGGCAGAG GGAGGCGGAT TTCTGAATTC
  R
  AGGCCAGCCT GGTCTACAAA GTGAGTTCCA GGACAGCCAG GGCTATACAG AGAAACCCTG
  TCTCGAAAAA CCAAAAAAAT AAAAATAATA AATAATAAAT AAAAAATAAT AATAATTTGC
  AGGGCTGGAG AGATAGCTCA GTGGTTAAGA GCATTGGCTG CTCTTCCCGA GGTCCTGAGT
  TCAATTCCCA GCAACCACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397861335	MGP_WTSI_17_24845399	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	A	G	G	A	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48725585					SNP	A	A	G	A	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	G	A	G	G	A	A	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397861335	MGP_WTSI_17_24845399	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24927428 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8740	CpG island 8740	548 bp distal
Rr392440	regulatory region 392440	1787 bp upstream
Rr405091	regulatory region 405091	602 bp downstream
Rr523395	regulatory region 523395	805 bp distal
Rr523396	regulatory region 523396	304 bp distal
Rr523397	regulatory region 523397	206 bp proximal
Rr523398	regulatory region 523398	408 bp proximal
Tbl3	transducin (beta)-like 3	801 bp upstream
Tssr146772	transcription start site region 146772	844 bp upstream
Tssr146773	transcription start site region 146773	793 bp upstream