rs48727381 SNP Detail

Summary

• ID
  rs48727381
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCAGTC CCCGGAACTC
  GGAAGGTGGA AGGTAAGATC CTAGTCCTCC AAATTGTTCT CTAACCTCTA CACCGCTCTG
  AGGCTCCAGG GTACTTACAC ACATACACGG AAACAATCAA CCAGTCAAAC AATAAACGTA
  AAATATTACA ATTCTTTAGG GAATCCAAGG GTATTTGGTC TCTTAGGTAG GGGTCCAAAA
  K
  CTCTGGGGAT AGGGTTTAGA ATCCTTTGGA CAGGCTCATT ACATCATGGG GGGCTTAAAC
  GCACTAGTGG GGGAGGGGGA CTGGGAATCT TGGGAGGGCG GGTCAAACCT TGGTGTCTGA
  GTAAGTCCTT CAAGGACTGG TTAGCGCCCT TGAGGACAGG GTTAGCAAAG AAATGCTGAA
  ATTCTTTGGA GGTGAATTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147984262	ENSMUSSNP7005390	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48727381					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	255 bp proximal
Hck	hemopoietic cell kinase	278 bp upstream
Rr567550	regulatory region 567550	152 bp distal
Rr567551	regulatory region 567551	1 bp proximal
Rr567552	regulatory region 567552	317 bp proximal
Rr567553	regulatory region 567553	481 bp proximal
Tssr20863	transcription start site region 20863	517 bp downstream
Tssr20864	transcription start site region 20864	481 bp downstream
Tssr20865	transcription start site region 20865	284 bp upstream
Tssr20866	transcription start site region 20866	299 bp upstream
Tssr26882	transcription start site region 26882	828 bp downstream