rs48727724 SNP Detail

Summary

• ID
  rs48727724
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:84107700 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTCCAA TCAGTCCAGT
  TTAAAGGTTC CTATCAACTT TCCAAAGAAG CCTGGAGGAG TGAAGAATTC TGATTGTGAA
  ACTTTTGGAA ACCTGTTGGA ACCTTAGTGT TTTGCGTGAG CAGTGGGTGG GAGTGAGTGG
  AGTGCGTGGG TGGAGACTTT CTGAAAGGGT GGCGCGTGTA TGTCCTTAGC ATGCTTTGGC
  Y
  GTGCATGAAG CAGAGGATTG CTTCATCCTG TGATGAAATG CTGAGACTGT GGAGAATAAA
  AATTTGAACC CTGCCGACCT AAAAAGGGCT TGAGCTGTGT TCACATAAAG CGTCCAGAGT
  ACACCAATGA TTTGTTAGAA GTGGAAATGA GAATAGACTG AAAAGCTTTC CGAGCAAACT
  TCATTAGAGA TTAAAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147631373	ENSMUSSNP4232442	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48727724					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:84107700 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10337	CpG island 10337	576 bp distal
Gm58899	predicted gene, 58899	1680 bp downstream
Ptgr3	prostaglandin reductase 3	within coordinates
Rr353212	regulatory region 353212	within coordinates
Rr405764	regulatory region 405764	496 bp downstream
Tshz1	teashirt zinc finger family member 1	1869 bp upstream
Tssr152202	transcription start site region 152202	1888 bp downstream
Tssr152203	transcription start site region 152203	1397 bp downstream
Tssr152204	transcription start site region 152204	1369 bp downstream
Tssr152205	transcription start site region 152205	1332 bp downstream
Tssr152206	transcription start site region 152206	882 bp downstream
Tssr154126	transcription start site region 154126	1859 bp upstream