rs48728354 SNP Detail

Summary

• ID
  rs48728354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129059869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTTTGGGGG GGAGGCTCTG CTGAACTATC CCACAGGCTG
  CAAGGCTGGT GGCTAGGAAG GTGTTGGGCA TCCGTGATTG TAAAGCCAGC ATCACTAAAC
  M
  AATTGCTTCT AAAGCCAGTC ACTGGGGTCA ACTACACTGA AGCAGGAAGA GAAGAGAGAA
  TTGAAGCTAA CAAAGGAAGC CAAGTGGGAA GTGGAAGTTA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60840189	NES16015858	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs48728354					SNP	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60840189	NES16015858	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129059869 () rs orientation: forward

Symbol	Name	Function Class
Rr109750	regulatory region 109750	669 bp distal
Rr127045	regulatory region 127045	669 bp distal
Rr127046	regulatory region 127046	within coordinates
Stx2	syntaxin 2	1752 bp downstream