rs48728472 SNP Detail

Summary

• ID
  rs48728472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44464303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCCCCC TTCCACCTTA
  TCATGGCTCC TTCTCCCCAT CCCTCAGCCC TCAGTTCAGA TGTCATCTAC TTAGAGGGGC
  TGACTTCTCA ACTATGTCTT TCATCACTGT CCACTAAGCT TTGGTCTCCC ACTTCTGTCT
  CCTGATGCAC CCATGAGCTT AGGGATCCCT TGCTCGGAAC CCTGCAGACC TAGAACAGTG
  Y
  TGGGCACACT GCAGGCCCTC AGTACTGATC TTGTGAAGGA ATAAATTCTT CCTTTTCTGT
  CCACCCCCAC CCCCAGCTCA ACCCACCTCT CTTCTTAACC TGTTCTTACC TGCCAGGGGC
  TCTCCCCCCC CTGGAAGCCC GCCCTCCAGG GCACCCCCAA GGACCTCATA GGGGCCCAGG
  GGGGCAGGGG CCAGGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149122996	ENSMUSSNP3715326	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48728472					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44464303 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	within coordinates
Cpgi18994	CpG island 18994	870 bp proximal
Il4i1b	interleukin 4 induced 1B	1491 bp upstream
Nup62	nucleoporin 62	1209 bp upstream
Rr400297	regulatory region 400297	893 bp upstream
Tssr66425	transcription start site region 66425	1539 bp downstream
Tssr66426	transcription start site region 66426	1050 bp upstream
Tssr66427	transcription start site region 66427	1411 bp upstream
Tssr66428	transcription start site region 66428	1444 bp upstream
Tssr66429	transcription start site region 66429	1485 bp upstream
Tssr66430	transcription start site region 66430	1507 bp upstream
Tssr72229	transcription start site region 72229	1535 bp upstream
Tssr72230	transcription start site region 72230	740 bp downstream
Tssr72231	transcription start site region 72231	785 bp downstream
Tssr72232	transcription start site region 72232	1030 bp downstream
Tssr72233	transcription start site region 72233	1707 bp downstream