rs48728700 SNP Detail

Summary

• ID
  rs48728700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153537177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGGACA GGGAACTAGG
  TTGAGATGAC TACCAAGACA GTGCCAGGTA GGCCTGGACA GGCTCCCAGG ACAGGAAGCA
  AGCCAAAGGC GGGAAGAAGC CAACCTGGGA CAGCAGGCCC CAGGCAGGAG TGAGCCCAAG
  ACAAATGGCC GCACAGGTGG GCCGGTAGAG GAGCTGGCCT GAGATGAACA CTAATCTGTC
  R
  CCCTCCAGGC CTAGAGGGTG GGGACAGATC ATGCCCAAGA TGACTCCTGC CCTGTGCCAT
  ATTGCACAAG CAGGGCATAG CACTCCTGAG ACCTCTCCTG AGACGACCTC AGACCCTGAG
  CCACCCGGGC ACCACTAAGA GGAGCAAGCG AGTCGTGGAG AAATGAAAGA GAAGGAGAAG
  CAGAAGGAAG TGGGCACAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136113987	ENSMUSSNP6267843	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48728700					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153537177 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	248 bp downstream
Rr587767	regulatory region 587767	930 bp distal
Rr587768	regulatory region 587768	787 bp distal
Rr587769	regulatory region 587769	596 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	315 bp distal
Rr587772	regulatory region 587772	270 bp proximal